What is PathVisio?

PathVisio is a free open-source biological pathway analysis software that allows you to draw, edit and analyze biological pathways. Learn more.

How to use PathVisio?

Learn how to download PathVisio and go through the tutorials to find out how to do pathway analysis and how to visualize and analyze your data. Get started.

PathVisio Plugins

Plugins are extensions that provide advanced analysis methods, visualization options or additional import/export functionality. Find out more.

  • pathvisio3
  • pluginmanger
  • bridgedbconfig
  • htmlexport
  • graphic-9.large


  • New PathVisio 3 paper!! “PathVisio 3: An Extendable Pathway Analysis Toolbox.” PLoS Comput Biol. 2015 Feb 23;11(2):e1004085. doi: 10.1371/journal.pcbi.1004085
  • GSoC 2014: Three selected projects for PathVisio, PathVisiojs and WikiPathways. Congratulations to Jonathan Melius, Rohan Saxena and Alexandr Truhin.
  • Developer website: The previous website will stay available on developers.pathvisio.org and will be used as a developers website.
  • Plugin repository: Find plugins in the plugin repository and install them through the plugin manager.



  • Feb 28 2015 PathVisio 3.2.0 has been released!
  • Jan 31 2014 PathVisio 3.1.3 has been released!
  • Oct 29 2013 PathVisio 3.1.2 has been released!
  • Oct 04 2013 PathVisio 3.1.1 has been released!
  • Jul 02 2013 PathVisio 3.1.0 has been released!
  • Jun 06 2013 PathVisio 3.0.1 has been released!

Check out the detailed release notes on our developers website.