What is PathVisio?

PathVisio is a free open-source biological pathway analysis software that allows you to draw, edit and analyze biological pathways. Learn more.

How to use PathVisio?

Learn how to download PathVisio and go through the tutorials to find out how to do pathway analysis and how to visualize and analyze your data. Get started.

PathVisio Plugins

Plugins are extensions that provide advanced analysis methods, visualization options or additional import/export functionality. Find out more.

  • pathvisio3
  • pluginmanger
  • bridgedbconfig
  • htmlexport
  • graphic-9.large


  • Check out the new WikiPathways paper! “WikiPathways: capturing the full diversity of pathway knowledge.” Nucl. Acids Res. first published online October 19, 2015. doi: 10.1093/nar/gkv1024
  • BioSB 2015 Application Showcase: Martina Kutmon presented WikiPathways, PathVisio and the WikiPathways App for Cytoscape and won the best application showcase prize. Congratulations!
  • New PathVisio 3 paper!! “PathVisio 3: An Extendable Pathway Analysis Toolbox.” PLoS Comput Biol. 2015 Feb 23;11(2):e1004085. doi: 10.1371/journal.pcbi.1004085
  • Developer website: The previous website will stay available on developers.pathvisio.org and will be used as a developers website.
  • Plugin repository: Find plugins in the plugin repository and install them through the plugin manager.



  • Sep 20 2016 PathVisio 3.2.3 has been released!
  • May 03 2016 PathVisio 3.2.2 has been released!
  • Oct 07 2015 PathVisio 3.2.1 has been released!
  • Feb 28 2015 PathVisio 3.2.0 has been released!

Check out the detailed release notes on our github page.