|
|
|
@3266
|
[3266]
|
11 hours |
martijn |
Update version no
|
|
|
|
@3265
|
[3265]
|
11 hours |
martijn |
Point release to fix version no
|
|
|
|
@3264
|
[3264]
|
11 hours |
martijn |
Update version no
|
|
|
|
@3263
|
[3263]
|
11 hours |
martijn |
Milestone 25 tag
|
|
|
|
@3262
|
[3262]
|
11 hours |
martijn |
Milestone 25 release branch
|
|
|
|
@3261
|
[3261]
|
16 hours |
martijn |
Remove problematic @Overrides
|
|
|
|
@3260
|
[3260]
|
16 hours |
martijn |
Update to bridgedb v1.0.2
|
|
|
|
@3259
|
[3259]
|
17 hours |
martijn |
Remove debugging code
|
|
|
|
@3258
|
[3258]
|
18 hours |
martijn |
Added license headers
|
|
|
|
@3257
|
[3257]
|
18 hours |
martijn |
Allow multi-line textlabels in DataNodeDialog? (fixes #1217)
|
|
|
|
@3256
|
[3256]
|
18 hours |
martijn |
Add DataNodeType? combo to DataNodeDialog?
|
|
|
|
@3255
|
[3255]
|
18 hours |
martijn |
Fixes #1235: Make DataSourceHandler? sensitive to the DataNodeType? context
|
|
|
|
@3254
|
[3254]
|
37 hours |
thomas |
changed ID to Identifier in txt exporter (should fix #1197)
|
|
|
|
@3253
|
[3253]
|
4 days |
martijn |
use the terms "MIM shapes" and "MIM interactions"
|
|
|
|
@3252
|
[3252]
|
4 days |
martijn |
update some icons (change background to transparent)
|
|
|
|
@3251
|
[3251]
|
4 days |
martijn |
programmatic hook for user to add new shapes to the side-bar tab
|
|
|
|
@3250
|
[3250]
|
4 days |
martijn |
1. change the title of the side-bar tab from "Items" to "Objects"
2. …
|
|
|
|
@3249
|
[3249]
|
4 days |
martijn |
add a new tab in the sidebar with all the shapes
|
|
|
|
@3248
|
[3248]
|
4 days |
martijn |
1. remove "arc", "brace", "tbar", "receptor/ligand", add "arrow"
2. …
|
|
|
|
@3247
|
[3247]
|
4 days |
martijn |
pressing Shift can reserve the width-height ratio during dragging the …
|
|
|
|
@3246
|
[3246]
|
4 days |
martijn |
TestDropDown? plugin
|
|
|
|
@3245
|
[3245]
|
4 days |
martijn |
remove tag '//lb', fix the bug of 'buttons stay selected'
|
|
|
|
@3244
|
[3244]
|
4 days |
martijn |
Merged trunk r3191:3195 into gsoc-liubing
|
|
|
|
@3243
|
[3243]
|
4 days |
martijn |
ticket #1181: Office-like toolbar
|
|
|
|
@3242
|
[3242]
|
4 days |
martijn |
|
|
|
|
@3241
|
[3241]
|
4 days |
martijn |
30 icons are added
|
|
|
|
@3240
|
[3240]
|
4 days |
martijn |
test
|
|
|
|
@3239
|
[3239]
|
5 days |
liubing |
|
|
|
|
@3238
|
[3238]
|
7 days |
KristinaHanspers |
Parser for PV html exports to MediaWiki? ImageMap? format, with links to …
|
|
|
|
@3237
|
[3237]
|
8 days |
KristinaHanspers |
- Changed maplinks from labels to datanodes
- Fixed multiple labels for …
|
|
|
|
@3236
|
[3236]
|
8 days |
thomas |
- free segment connector (modified patch by leon)
|
|
|
|
@3235
|
[3235]
|
9 days |
martijn |
Extra FileUtils? method for replacing an extension
|
|
|
|
@3234
|
[3234]
|
10 days |
liubing |
1. update "positioning pathway during scroll-wheel zooming"
2. panning …
|
|
|
|
@3233
|
[3233]
|
12 days |
thomas |
fixed #1225
|
|
|
|
@3232
|
[3232]
|
2 weeks |
liubing |
Keep relative position while zooming
|
|
|
|
@3231
|
[3231]
|
3 weeks |
liubing |
fix the negative zooming bug (ticket #1224) in version 3230
|
|
|
|
@3230
|
[3230]
|
3 weeks |
liubing |
use the terms "MIM shapes" and "MIM interactions"
|
|
|
|
@3229
|
[3229]
|
3 weeks |
liubing |
update some icons (change background to transparent)
|
|
|
|
@3228
|
[3228]
|
3 weeks |
thomas |
fixed compiler error in superpathways plugin
|
|
|
|
@3227
|
[3227]
|
3 weeks |
thomas |
fixed #1223
|
|
|
|
@3226
|
[3226]
|
3 weeks |
thomas |
fixed #1223
|
|
|
|
@3225
|
[3225]
|
3 weeks |
AlexanderPico |
updated bridgedb jars, adding Gene Wiki support
|
|
|
|
@3224
|
[3224]
|
4 weeks |
liubing |
ticket #1185 - zoom with scrollwheel
|
|
|
|
@3223
|
[3223]
|
4 weeks |
liubing |
programmatic hook for user to add new shapes to the side-bar tab
|
|
|
|
@3222
|
[3222]
|
4 weeks |
liubing |
1. change the title of the side-bar tab from "Items" to "Objects"
2. …
|
|
|
|
@3221
|
[3221]
|
5 weeks |
thomas |
Cytoscape plugin:
- increased version number
- added 2.7 compatibility
|
|
|
|
@3220
|
[3220]
|
5 weeks |
thomas |
fixed #1213
|
|
|
|
@3219
|
[3219]
|
6 weeks |
liubing |
add a new tab in the sidebar with all the shapes
|
|
|
|
@3218
|
[3218]
|
6 weeks |
martijn |
Milestone 24.0 tag
|
|
|
|
@3217
|
[3217]
|
6 weeks |
martijn |
Milestone 24 release branch
|
|
|
|
@3216
|
[3216]
|
6 weeks |
martijn |
Updated version no to 2.0.6
|
|
|
|
@3215
|
[3215]
|
6 weeks |
martijn |
Removed some Override annotations that cause problems on Java 5
|
|
|
|
@3214
|
[3214]
|
6 weeks |
martijn |
Removed some Override annotations that cause problems on Java 5
|
|
|
|
@3213
|
[3213]
|
6 weeks |
martijn |
Added license header
|
|
|
|
@3212
|
[3212]
|
6 weeks |
martijn |
Removed obsolete code to fix superpathways compilation problem
|
|
|
|
@3211
|
[3211]
|
6 weeks |
martijn |
Added generic action listener for all "Browse" buttons
|
|
|
|
@3210
|
[3210]
|
6 weeks |
liubing |
1. remove "arc", "brace", "tbar", "receptor/ligand", add "arrow"
2. …
|
|
|
|
@3209
|
[3209]
|
7 weeks |
KristinaHanspers |
new Kegg dtd
|
|
|
|
@3208
|
[3208]
|
7 weeks |
martijn |
Updated BridgeDb, new species added
|
|
|
|
@3207
|
[3207]
|
7 weeks |
KristinaHanspers |
Updated build file
|
|
|
|
@3206
|
[3206]
|
7 weeks |
liubing |
pressing Shift can reserve the width-height ratio during dragging the …
|
|
|
|
@3205
|
[3205]
|
7 weeks |
KristinaHanspers |
Updates to Kegg Converter
|
|
|
|
@3204
|
[3204]
|
7 weeks |
KristinaHanspers |
Updates to Kegg API
|
|
|
|
@3203
|
[3203]
|
7 weeks |
KristinaHanspers |
Updating Kegg Converter script to work with latest KEGG kgml
|
|
|
|
@3202
|
[3202]
|
7 weeks |
liubing |
TestDropDown? plugin
|
|
|
|
@3201
|
[3201]
|
7 weeks |
liubing |
remove tag '//lb', fix the bug of 'buttons stay selected'
|
|
|
|
@3200
|
[3200]
|
8 weeks |
martijn |
Merged trunk r3191:3195 into gsoc-liubing
|
|
|
|
@3199
|
[3199]
|
8 weeks |
liubing |
ticket #1181: Office-like toolbar
|
|
|
|
@3198
|
[3198]
|
8 weeks |
liubing |
|
|
|
|
@3197
|
[3197]
|
8 weeks |
liubing |
30 icons are added
|
|
|
|
@3196
|
[3196]
|
2 months |
liubing |
test
|
|
|
|
@3195
|
[3195]
|
3 months |
martijn |
Javadoc for Legend object
|
|
|
|
@3194
|
[3194]
|
3 months |
martijn |
Fixed missing jar in binary tarball
|
|
|
|
@3193
|
[3193]
|
3 months |
martijn |
Variable number of links on shape, patch by Margot (fixes #1173)
|
|
|
|
@3192
|
[3192]
|
3 months |
martijn |
Fix reverse dependency in legend code
|
|
|
|
@3191
|
[3191]
|
3 months |
martijn |
Branch for summer-of-code student Liu Bing
|
|
|
|
@3190
|
[3190]
|
3 months |
martijn |
Disabled check for tabs, causes too many warnings
|
|
|
|
@3189
|
[3189]
|
3 months |
martijn |
Show Legend inside pathway diagram (fixes #979)
|
|
|
|
@3188
|
[3188]
|
3 months |
martijn |
Milestone 23.0 release tag
|
|
|
|
@3187
|
[3187]
|
3 months |
martijn |
Milestone 23 release branch
|
|
|
|
@3186
|
[3186]
|
3 months |
martijn |
Updated pathvisio version for upcoming release
|
|
|
|
@3185
|
[3185]
|
3 months |
martijn |
Updated BridgeDb
|
|
|
|
@3184
|
[3184]
|
3 months |
martijn |
DisallowLinks? option on GroupStyle?, patch by Margot (fixes #1162)
|
|
|
|
@3183
|
[3183]
|
3 months |
martijn |
Prevent NPE when deleting group with connector in it
|
|
|
|
@3182
|
[3182]
|
3 months |
martijn |
Fix NPE when deleting a group, patch by Margot. Fixes #1163
|
|
|
|
@3181
|
[3181]
|
3 months |
martijn |
Removing empty directories
|
|
|
|
@3180
|
[3180]
|
3 months |
martijn |
Removed unused makeGdb tool,
most of the important bits have already been …
|
|
|
|
@3179
|
[3179]
|
3 months |
martijn |
Trigger refresh of connector after object deletion. Fixes #1058
|
|
|
|
@3178
|
[3178]
|
3 months |
martijn |
Clear property table when nothing is selected
|
|
|
|
@3177
|
[3177]
|
3 months |
martijn |
Make sure connecting lines are updated when group is updated
|
|
|
|
@3176
|
[3176]
|
3 months |
martijn |
Removed deprecated methods
|
|
|
|
@3175
|
[3175]
|
3 months |
martijn |
Added code to prevent double movement of States
|
|
|
|
@3174
|
[3174]
|
3 months |
martijn |
Trigger group refresh from model
|
|
|
|
@3173
|
[3173]
|
3 months |
martijn |
Fix deletion, c/p, undo and read / write of States
|
|
|
|
@3172
|
[3172]
|
3 months |
martijn |
Move state by dragging, removed rotation handle
|
|
|
|
@3171
|
[3171]
|
3 months |
martijn |
Menu items for adding and removing state.
|
|
|
|
@3170
|
[3170]
|
3 months |
martijn |
Fixed problems with large Ctrl+click selections
|
|
|
|
@3169
|
[3169]
|
4 months |
martijn |
Fixed lookup of Description attribute
|
|
|
|
@3168
|
[3168]
|
4 months |
martijn |
Updated ExTemplate? to new API
|
|
|
|
@3167
|
[3167]
|
4 months |
thomas |
fixed regression in lucene indexer
|
|
|
|