Timeline


and .

09/03/10: Today

10:37 Ticket #1271 (Cytoscape gpml plugin: broken organism filter for tuberculosis) created by thomaskelder
As reported by Allan Kuchinsky: In the user input panel, if I select …

09/01/10:

15:27 Changeset [3296] by martijn
Added Ferry to contributors list
13:07 Changeset [3295] by martijn
Mark's patch causes NPE, so I'm trying alternative approach: only consider …
12:49 Changeset [3294] by martijn
Smoother mitochondria shape
12:41 Ticket #1270 (Version Check for alternative installer) created by martijn
When Installing PV using the alternative installer, it should occasionally …
11:45 Changeset [3293] by martijn
Adjust mouse cursor to rotation of shape, fixes #1135, patch by Tina
11:29 Ticket #1263 (Add GENMAPP_COMPATIBLE preference) closed by martijn
fixed: Comitted, thanks Mark.
11:28 Changeset [3292] by martijn
Make pathway title length check dependent on compatibility flag. Fixes …
11:21 Ticket #1146 (Launch browser when Ctrl+clicking on label with url) closed by martijn
fixed: Comitted, thanks!
11:21 Changeset [3291] by martijn
Fixes #1146: launch browser with ctrl+click on link (patch by Tina)
10:45 Changeset [3290] by martijn
Paste objects in front, fixes #449 (patch by Tina)
10:45 Ticket #449 (Pasted objects should be ordered in front) closed by martijn
fixed: Thanks, comitted.
10:20 Ticket #1048 (Add "thick" to the line style) closed by martijn
fixed: This was fixed a while ago, but we forgot to close this bug.
10:16 Ticket #1249 (PathVisio data import doesn't default to looking in first column for ID) closed by martijn
fixed

08/31/10:

21:21 Ticket #1267 (Show literature reference numbers in png export?) closed by AlexanderPico
worksforme: Ah, I forgot about the pathway page png. That's important! The workaround …
11:32 Ticket #1268 (I can't download pathway files for Homo sapiens (Analysis collection ...) closed by thomaskelder
fixed: Fixed batchDownload.php, turned out all cache for a pathway was updated by …
11:05 Ticket #1269 (Biopax converter fails to convert WP1601) created by thomaskelder
When trying to download …
10:03 DevMeetings edited by martijn
(diff)
03:10 Ticket #1268 (I can't download pathway files for Homo sapiens (Analysis collection ...) created by Takuya Ozawa
I can't download pathway files for Homo sapiens (Analysis collection …

08/30/10:

23:32 Ticket #1267 (Show literature reference numbers in png export?) created by AlexanderPico
Current the reference numbers are shown in png exports. Should we skip …
16:16 Ticket #1265 (Comma only lines created in .csv by MS-Excel prevent import) closed by martijn
duplicate: This is actually a duplicate of #1208, it's fixed now.
16:15 Ticket #1208 (Blank lines in Expression Data give errors in PathVisio) closed by martijn
fixed: Found the problem, it's caused by a NullPointerException? when the …
15:22 Ticket #1266 (Bogus browse button in IDMapper dialog) created by martijn
Using the BridgeDbConfig? plugin, in the IDMapper dialog: When opening the …
11:55 BugsStart edited by martijn
(diff)
11:55 BugsStart edited by martijn
(diff)
10:40 Ticket #1265 (Comma only lines created in .csv by MS-Excel prevent import) created by Evelo
I had some troubles importing a .csv file. MS-Excel seems to add empty …
09:34 Milestone Milestone 26 completed
09:33 Ticket #1264 (gpml download doesn't work for homo sapiens) closed by thomaskelder
fixed: Turned out that the species prefix was incorrectly registered. This is …
09:03 Ticket #1264 (gpml download doesn't work for homo sapiens) created by thomaskelder
The archive download: …
08:47 Ticket #1246 (GPML -> image export results in transparent datanodes) closed by thomaskelder
invalid: The datanodes seem to have the transparant attribute set to true on the …

08/28/10:

11:11 Ticket #1263 (Add GENMAPP_COMPATIBLE preference) created by markwoon
There's a 50 character limit on the pathway name. According to …
00:01 Ticket #1152 (Make user contact info (email) appear on user page) closed by AlexanderPico
fixed: email notification now works for watchlist and talk pages

08/27/10:

23:43 Changeset [3289] by AlexanderPico
updated mitochondria shape and icon
21:11 PluginDevelopment edited by martijn
(diff)
21:11 PluginDevelopment edited by martijn
(diff)
20:38 PathVisioDownload edited by martijn
(diff)
20:38 WikiStart edited by martijn
(diff)
20:37 ReleaseNotes edited by martijn
(diff)
20:37 ReleaseNotes edited by martijn
(diff)
20:34 Ticket #1046 (Create plugin hook to add tab to PathwayElementDialog) closed by martijn
fixed
20:22 Changeset [3288] by martijn
Milestone 26 release tag
20:21 Changeset [3287] by martijn
Milestone 26 release branch
20:10 Changeset [3286] by martijn
Updated version no. for release
14:09 Changeset [3285] by martijn
Default style for cellular components
14:09 Changeset [3284] by martijn
Fix initialization bug, implement relative curve in Path2Java tool
14:09 Changeset [3283] by martijn
Deprecate old GenMAPP shapes rather than remove them, for backwards …
12:13 Ticket #1262 (remove curation tag - dialog?) created by tina
whenever i want to delete or save something, usually a dialog pops up and …
12:07 Ticket #1261 (dialog positions) created by tina
currently the dialogs are always positions depending on the panel. after …
11:49 Ticket #1260 (color change - no immediate effect because element is still selected) created by tina
I selected an element (e.g. GeneProduct?) and changed the color in the …
11:38 Ticket #1259 (svg viewer (wikipathways test) - move buttons (wrong handling?)) created by tina
in the svg viewer which is only available on the wikipathways test site, …
11:25 Ticket #1258 (return button from comparison page) created by tina
there is no return button from the special comparison page to the main …
11:18 Ticket #1257 (HTML text shown after reverting) created by tina
after reverting to a previous version the entry in the history list has a …
11:08 Ticket #1256 (data node entrez links don't work) created by tina
when clicking on a link to Entrez the id gets not replaced and an error …
10:52 Changeset [3282] by martijn
Pick the first column of the dataset as id column by default, fixes #1249
10:52 Changeset [3281] by martijn
Added breaks in switch in PopupDialogHandler?
04:52 Changeset [3280] by AlexanderPico
New objects panel: - removed old shapes - removed old receptor/ligand …
01:36 Ticket #1255 (Pathway archive quick links on pathway page) created by KristinaHanspers
It would be nice to have a quick way of navigating back to a particular …

08/26/10:

17:06 Changeset [3279] by martijn
Remove problematic @Override annotations
16:23 Changeset [3278] by martijn
Add a hook for the pathway element dialog. Fixes #1046
02:18 Ticket #1242 (pathway tab label is obscured when viewing thread) closed by AlexanderPico
fixed
02:15 Ticket #1254 (Not possible to resize sidepanel after initial resize.) created by KristinaHanspers
After resizing the side panel, the panel seems to have a fixed width that …
02:13 Ticket #1251 (Items in Objects side panel are not displayed properly on startup) closed by KristinaHanspers
invalid: I'm closing this ticket since it was due to some changes to the PathVisio
01:27 Ticket #1239 (Discussion feeds on main page should not include deleted discussions) closed by AlexanderPico
fixed

08/25/10:

21:00 DevMeetings edited by AlexanderPico
(diff)
20:16 DevMeetings edited by martijn
(diff)
19:57 Ticket #1252 (Link to HuGO on PathVisio site doesn't work) closed by KristinaHanspers
fixed: I have updated HUGO to HGNC with a proper link. Also updated other …
19:56 DatabasesMapps edited by KristinaHanspers
(diff)
19:54 DevMeetings edited by martijn
(diff)
19:52 DevMeetings edited by martijn
(diff)
19:51 DevMeetings edited by martijn
(diff)
19:45 DatabasesMapps edited by KristinaHanspers
(diff)
19:14 DatabasesMapps edited by KristinaHanspers
(diff)
13:34 Changeset [3277] by martijn
Added missing license headers
12:57 Ticket #1253 (include wp paper in announcement) created by martijn
Include this in the next announcement "WikiPathways? biotransformation …
12:54 ProjectIdeas edited by martijn
(diff)
09:52 Ticket #1252 (Link to HuGO on PathVisio site doesn't work) created by Evelo
The link to HuGO on …

08/24/10:

16:59 PathVisioDownload edited by martijn
(diff)
15:56 Ticket #1251 (Items in Objects side panel are not displayed properly on startup) created by KristinaHanspers
The objects side panel is being displayed right on startup (see screenshot …
09:35 Ticket #1250 (Visualization plugin - using colorcoding of gene/metabolite boxes after ...) created by Susan
In a pathway genes are shown as black boxes and metabolites as blue boxes. …

08/20/10:

11:39 Ticket #832 (Add copy/paste items to right-click menu) closed by martijn
fixed: Comitted, thanks!
11:38 Changeset [3276] by martijn
Added c/p actions to pop-up menu, Fixes #832
10:29 Changeset [3275] by martijn
Added Tina to aboutDlg, added hyperlink to aboutDlg, centralized hyperlink …

08/19/10:

14:52 Ticket #858 (After selecting zoom-to-fit, show actual percentage) closed by martijn
fixed
14:50 Changeset [3274] by martijn
Fixes #858, patch by Tina

08/18/10:

23:22 Ticket #1249 (PathVisio data import doesn't default to looking in first column for ID) created by KristinaHanspers
It seems the data import in PathVisio doesn't by default look in the first …
23:05 Ticket #1211 (Draw additional shapes for PathVisio) closed by KristinaHanspers
duplicate
23:03 Ticket #1210 (Modify resize function to preserve width-height ratio) closed by KristinaHanspers
fixed
23:00 Ticket #1207 (GSoC, Shapes drop-down: buttons stay selected after clicking.) closed by KristinaHanspers
fixed

08/17/10:

23:35 Changeset [3273] by KristinaHanspers
Changed output to create a Wikipedia template page

08/16/10:

21:08 Changeset [3272] by martijn
Parameter model for building dialogs easily
21:04 Changeset [3271] by martijn
Extra flexibility in BrowseButtonActionListener?
19:06 Ticket #970 (Install RSS extension) closed by AlexanderPico
fixed
18:10 Changeset [3270] by liubing
avoid referring to VPathwaySwing from within VPathway
11:31 Changeset [3269] by martijn
Remove obsolete biopax plugin, new one can be found in pvplugins …
08:29 Ticket #1247 (Covert pathway link labels to datanodes) closed by thomaskelder
duplicate: Duplicate of #1221, which contains the original plan (of which converting …

08/15/10:

20:26 Ticket #1247 (Covert pathway link labels to datanodes) created by martijn
Convert labels in the WikiPathways? content that refer to a different …
16:43 Changeset [3268] by liubing
fix the bug - "pathway mess up during zooming or panning …

08/13/10:

13:06 Ticket #1246 (GPML -> image export results in transparent datanodes) created by thomaskelder
See: …
11:04 Ticket #1245 (BridgeDbConfig plugin settings should be remembered) created by martijn
Settings should be rememberd The plug in does not remember BridgeDb
10:41 BridgeDbConfigPluginHelp edited by martijn
(diff)

08/12/10:

13:56 AlternativeInstallation edited by martijn
(diff)
13:56 AlternativeInstallation edited by martijn
(diff)
13:55 AlternativeInstallation edited by martijn
(diff)
13:54 AlternativeInstallation edited by martijn
(diff)
13:52 BridgeDbConfigPluginHelp edited by martijn
(diff)
13:51 BridgeDbConfigPluginHelp edited by martijn
(diff)
13:51 BridgeDbConfigPluginHelp edited by martijn
(diff)
13:33 BridgeDbConfigPluginHelp edited by martijn
(diff)
12:54 BridgeDb edited by martijn
(diff)
12:53 BridgeDbConfigPluginHelp edited by martijn
(diff)
12:51 BridgeDbConfigPluginHelp edited by martijn
(diff)
12:50 BridgeDbConfigPluginHelp edited by martijn
(diff)
12:49 BridgeDbConfigPluginHelp edited by martijn
(diff)
12:38 BridgeDbConfigPluginHelp edited by martijn
(diff)
12:34 BridgeDbConfigPluginHelp edited by martijn
(diff)
12:32 BridgeDbConfigPluginHelp edited by martijn
(diff)
12:31 BridgeDbConfigPluginHelp edited by martijn
(diff)
12:30 Screenshot-Configure new ID Mapper.png attached to BridgeDbConfigPluginHelp by martijn
Mapping Source Configuration Dialog
12:30 Screenshot-BridgeDb Configuration.png attached to BridgeDbConfigPluginHelp by martijn
BridgeDb Configuration Dialog
11:13 BridgeDbConfigPluginHelp created by martijn
11:06 PluginDocumentation edited by martijn
(diff)
11:05 PluginDocumentation edited by martijn
(diff)
02:43 Ticket #1244 (Prototype Infobox for Pathway Pages) created by AlexanderPico
Using Chetan's new work relating pathways and other pathway stats, start …
02:42 Ticket #1243 (Incoporate Chetan's Ontology Work) created by AlexanderPico
It's about time to incorporate Chetan's work on ontology tagging and the …

08/11/10:

19:58 DevMeetings edited by martijn
(diff)
19:57 DevMeetings edited by martijn
(diff)
19:31 DevMeetings edited by AlexanderPico
(diff)

08/09/10:

20:58 Ticket #1242 (pathway tab label is obscured when viewing thread) created by AlexanderPico
The tab label looks like this: <nstab-pathway> which is not exactly …
20:50 Changeset [3267] by liubing
accelerating pan and zoom using scroll button
20:42 Ticket #1241 (Pathways not easily linked from discussions page) closed by AlexanderPico
worksforme: There is a link to the full Discussion page at the top of the thread. From …
20:37 Ticket #1240 (Links to discussions do not always work) closed by AlexanderPico
duplicate: If you are referring to this link …
17:37 Ticket #1241 (Pathways not easily linked from discussions page) created by Evelo
If you end up in a discussion related to a specific pathway, for instance …
17:34 Ticket #1240 (Links to discussions do not always work) created by Evelo
There are links on the homepage that refer to "latest discussions". …

08/06/10:

22:13 Ticket #1239 (Discussion feeds on main page should not include deleted discussions) created by AlexanderPico
We should exclude deleted discussion from showing up on main page. This …
Note: See TracTimeline for information about the timeline view.