Table of Contents

  1. Tutorials
  2. Overview
  3. Main Features and Workflows
    1. Creating a new pathway
    2. Opening an existing pathway
    3. Searching for pathways
      1. Search by gene symbol
      2. Search by gene identifier
      3. Browsing search results
    4. Displaying experimental data
  4. Frequently Asked Questions
    1. General
      1. Can I run PathVisio when I'm offline?
      2. What is the relation between PathVisio and GenMAPP?
      3. What is the relation between PathVisio and Cytoscape?
      4. What is the relation between PathVisio and WikiPathways
      5. How do I cite PathVisio?
    2. Trouble-shooting
      1. The download link doesn't work
    3. Pathway Diagrams
      1. What is the meaning of each graphical symbol in pathways?
      2. Does PathVisio support dynamic layouts of pathways?
      3. Does PathVisio support SBML? How About BioPAX?
    4. Gene expression / omics data
      1. Which microarrays are supported by PathVisio
      2. Can I use PathVisio for metabolomics data?

Tutorials

Online Help

Frequently Asked Questions