This plugin implements a standard Gene Set Enrichment Analysis method that can be used to identify over represented pathways in the data set.
It also allows to load gene sets from MSigDB (


Version 1.0.0

  • Initial release for GSEA plugin
  • Can use a pathway collection or a gene set from MSigDB

  1. Download and start PathVisio
  2. Open the Plugin Manager: Plugins » Plugin Manager
  3. Click the Install button for Gene Set Enrichtment Analysis Plugin
  4. On success the plugin will be displayed in "installed plugins". If some error happens a message is displayed
  5. You can now use the plugin. Check out the plugin page to get started

If you have problems installing this plugin, please contact us.

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