BiomartConnect
Plugin connects to Biomart to retrieve additional information about GeneProdcuts.
BioPAX3 plugin
Import and export pathways in BioPAX level 3.
BridgeDbConfig Plugin
The BridgeDb configuration plugin let’s you configure identifier mapping resources to be used in PathVisio.
ComplexViz
Plugin enables visualization of complex component node data on the parent complex.
FindYourInteraction plugin
The FYI (FindYourInteractions) plugin suggests suitable identifiers for the interactions by querying
Gene Set Enrichtment Analysis Plugin
Gene set enrichment analysis plugin for PathVisio
GO plugin
Basic GO plugin to visualized genes annotated with a specific GO term.
HTML export plugin
Exports pathways and pathway statistics results as HTML pages.
IntViz
Plugin to visualize data on Interactions.
MAPPBuilder plugin
Automated way to create data nodes from file.
MiniMap
A mini map view of the pathways that allows easy navigation in larger pathways.
NIMWiz
NIMWiz assists looking up identifiers for named metabolites/genes
PathSBML
The PathSBML plugin allows researchers to visualize and overlay data on the same pathway models they use in simulation experiments.
PathVisioRPC
PathVisioRPC is an XML-RPC interface for PathVisio.
Quick Search Plugin
The Quick Search plug-in adds a search box with which one can search for identifiers and text within the pathway that is currently open.
RegInt plugin
Visualize regulatory interactions in the side panel of PathVisio
SBGN plugin
Draw diagrams with the Systems Biology Graphical Notation (SBGN)
TissueAnalyzer
Importing baseline expression data from Expression Atlas
TypeConverter
Convert a pathway element into another type, e.g. Label into Metabolite.
WikiPathways plugin
Browse, search and update pathways from WikiPathways