The TissueAnalyzer plugin for PathVisio provides a simple three step workflow for users to load, analyze and visualize tissue-specific pathway activity.
Plugin connects to Biomart to retrieve additional information about GeneProdcuts. The plugin currently implements three different Information Providers: BasicProvider, VariationProvider and SequenceProvider.
NIMWiz provides assistance in importing metabolomics data into PathVisio.It works with any data table with one column containing the names of metabolites. Nimwiz adds an extra column to that table containing identifiers from e.g. HMDB or ChEBI.Lookup is automatic where possible and manual where necessary. The assistance of the plugin greatly accelerates the lookup process.If there is an exact match in the dictionary, Nimwiz performs the lookup automatically. For near matches, Nimwiz lets you manually pick the best match from a list.
PathVisioRPC is an XML-RPC interface for PathVisio. It allows users to use PathVisio functionality directly in their favourite analytical environment,
License: Apache License