The TissueAnalyzer plugin for PathVisio provides a simple three step workflow for users to load, analyze and visualize tissue-specific pathway activity.
Plugin connects to Biomart to retrieve additional information about GeneProdcuts. The plugin currently implements three different Information Providers: BasicProvider, VariationProvider and SequenceProvider.
The PathSBML plugin allows researchers to visualize and overlay data on the same pathway models they use in simulation experiments. Exporting these models as GPML would also allow them to be uploaded to Wikipathways for community curation.
This plugin connects to the online pathway databases, WikiPathways, and allows users to search and browse pathways from PathVisio directly. It also enables updating and upload functionality (special permissions are required which can be requested from the WP developers).